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Video · Brian Kim

S Corp Payroll Setup for 1-person S Corporation - Explained

Brian Kim covers "S Corp Payroll Setup for 1-person S Corporation - Explained" on the @clearvaluetax9382 channel.

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Published on YouTube November 14, 2019 · 10:27 · Text on this page updated · About 6 min read

Key points from the video

  • Once you have an S corp, you are an employee of your own corporation (an employee-shareholder), so you must run payroll on yourself.
  • Brian strongly recommends payroll software over doing it by hand: it makes the monthly tax deposits and files the quarterly reports to the IRS, the state revenue department and state unemployment for you.
  • Register with your state (Department of Revenue, unemployment, or both) before you set up payroll. Even states with no income tax have unemployment tax to report and pay.
  • Pick a plan that includes electronic tax payments and e-filing. For a one-person S corp he suggests a monthly payroll, and pays salary from the business bank account to your personal account like any employee.
  • Brian's 2019 price guide: Gusto or QuickBooks about $25 to $50 a month; full-service providers can cost up to about $100 a month.

Summarized from Brian's own words in the video.

What's changed since this video

Video published November 14, 2019. Checked against current sources on October 13, 2026. These updates are from the ClearValue Lending Team, not Brian.

  • Social Security wage base New since the video

    In the video: Not covered.

    Now: For 2026 earnings, Social Security tax (6.2% from you and 6.2% from the corporation) applies to wages up to $184,500. Medicare tax (1.45% each) has no wage limit.

    Source: IRS — Topic 751, Social Security and Medicare withholding rates · as of

  • Reasonable salary first Still current

    In the video: Brian leaves how to set your salary to a separate video.

    Now: The IRS still requires an S corporation to pay a shareholder-employee reasonable compensation before taking non-wage distributions, and it can reclassify distributions as wages.

    Source: IRS — S corporation compensation and medical insurance issues · as of

  • Monthly tax deposits For comparison

    In the video: If you pay yourself monthly, you make monthly tax deposits.

    Now: Deposit timing follows your deposit schedule, not your payday. Most small employers are monthly depositors (taxes of $50,000 or less in the lookback period) and deposit by the 15th of the next month. If a quarter's tax is under $2,500, you may pay it with Form 941 instead.

    Source: IRS — Topic 757, Forms 941 and 944 deposit requirements · as of

  • Software prices For comparison

    In the video: About $25 to $50 a month for Gusto or QuickBooks; up to about $100 a month elsewhere.

    Now: These are Brian's 2019 figures. Payroll software prices change often and we have not re-checked them; compare current plans on each provider's site, and confirm the plan includes tax payments and e-filing.

    Source: IRS — Depositing and reporting employment taxes · as of

Reader guide · ClearValue Lending Team

Payroll for a one-person S corp: a step-by-step guide

ClearValue Lending Team· Scored against ClearValue's published methodology·Updated

Brian's video covers the mechanics of putting yourself on payroll once your business is an S corporation. This guide follows the video in order and adds the current IRS rules: tax rates, the 2026 Social Security wage base, deposit schedules and filing deadlines. Every figure comes from irs.gov, checked on October 13, 2026. How much salary to pay yourself is a separate topic; we touch on the IRS rule but not the amount.

You are now an employee of your own company

Brian covers this in the video · watch from 0:00

When a corporation elects S status (on IRS Form 2553), an owner who works in the business becomes a shareholder-employee. Brian's point is simple: because you are an employee, you have to run payroll on yourself, just as you would for anyone else.

That is different from a sole proprietorship or single-member LLC, where you pay self-employment tax on your profit with your personal return. In an S corp, your salary goes through payroll with tax withheld, and the rest of the profit can come out as distributions.

The IRS sets one condition. The corporation must pay you reasonable compensation for your work before it pays you non-wage distributions. If the salary is too low, the IRS can treat distributions as wages and charge employment taxes on them.

What payroll involves, by hand or by software

Brian covers this in the video · watch from 0:36

Brian lists what doing payroll yourself means: tax deposits for the withholding, quarterly reports to the IRS, reports to your state revenue department, and state unemployment reports. Payroll software does all of it from the payroll you run, and pays and files electronically.

Here is the full set of federal duties for a one-person S corp today:

Federal payroll duties for a one-person S corp
TaskWhat it coversWhen
Withhold and depositYour federal income tax withholding, plus Social Security and Medicare from both you and the corporationBy the 15th of the next month for most small employers
Form 941Quarterly report of wages and taxesEach quarter
Form 944 (if the IRS allows)Annual version of 941 for employers with $1,000 or less of these taxes a yearOnce a year
Form 940Federal unemployment (FUTA) taxYearly; deposits due in a quarter the tax tops $500
Form W-2 and W-3Your wage statement, filed with the Social Security AdministrationBy January 31
Federal payroll duties for a one-person S corp. Sources: IRS — Topic 757, Forms 941 and 944 deposit requirements, IRS — About Form 944, IRS — Topic 759, Form 940 (FUTA), IRS — Depositing and reporting employment taxes. State filings come on top of these.

Federal tax deposits must be made electronically. You can pay free through your IRS business tax account, Direct Pay for businesses or EFTPS. Payroll software usually does this for you.

The payroll taxes, with a worked example

Brian does not walk through the tax rates, so here they are. Both you (as employee) and the corporation (as employer) pay Social Security and Medicare tax on your salary.

Payroll tax rates for 2026
TaxEmployee shareEmployer shareWage limit
Social Security6.2%6.2%First $184,500 of 2026 wages
Medicare1.45%1.45%No limit
Additional Medicare0.9% withheld on wages over $200,000NoneApplies above $200,000
FUTA (federal unemployment)None6.0% on the first $7,000; 0.6% after the usual state credit$7,000 per employee
Payroll tax rates for 2026. Sources: IRS — Topic 751, Social Security and Medicare withholding rates and IRS — Topic 759, Form 940 (FUTA), checked October 13, 2026. Federal income tax withholding depends on your Form W-4.

Example: you pay yourself $60,000 a year, monthly. Social Security is $3,720 from you and $3,720 from the corporation. Medicare is $870 from each. That is about $382.50 a month from each side, plus your income tax withholding. The corporation deposits all of it.

Register with your state first

Brian covers this in the video · watch from 2:54

Brian's strongest practical tip: get your state registrations done before you set up payroll. You need the account numbers and tax rates from your state's Department of Revenue, its unemployment agency, or both. Without them, most payroll software will not let you finish setup.

This applies even in states with no income tax. You may have nothing to withhold for state income tax, but the corporation still owes state unemployment tax, and has to register and report.

Each state runs its own process, so check your state revenue and labor department websites. State unemployment matters federally too: paying it in full and on time is what earns the corporation the 5.4% credit against federal unemployment tax.

Choosing payroll software

Brian covers this in the video · watch from 4:23

Brian says his S corp clients mostly use QuickBooks payroll or Gusto. Whatever you choose, his rule is the same: do not buy the cheapest plan if it leaves out electronic tax payments and e-filing. Those two features are the reason to use software. Without them you are back to printing, signing and mailing forms.

When you compare plans today, check that the plan:

  • Pays federal and state payroll taxes electronically for you.
  • Files Forms 941 (or 944), 940, W-2 and W-3, plus your state reports.
  • Supports your state's unemployment and withholding accounts.
  • Lets your accountant log in with their own access.
  • Shows a clear monthly price for one employee.

The setup questions, and how often to pay yourself

Brian covers this in the video · watch from 5:28

Every provider asks the same things: your salary, how often you pay yourself, the company's details and bank account, and your own details and bank account.

On frequency, Brian recommends a monthly payroll if you are the only employee. Twice a month or every two weeks doubles the work with no real benefit for a one-person company.

On salary, he points to his separate video. The IRS rule is reasonable compensation for the work you do. The IRS says the instructions to Form 1120-S treat payments to a corporate officer as wages to the extent they are reasonable pay for services.

Treat yourself like any other employee

Brian covers this in the video · watch from 6:56

When payroll runs, money moves from the business bank account to your personal account, as it would for any employee. Brian calls that best practice: the records should show you being paid as an employee of your own corporation, because you are one.

He compares the options by how much hand-holding you want. A mid-tier software plan covers what most one-person S corps need. Full-service payroll companies do everything for you but cost much more. Whatever you use, give your accountant access so they can check the setup and the filings.

One S corp rule worth knowing: if you own more than 2% and the corporation pays your health insurance, the premiums go on your W-2 as wages. That can let you take an above-the-line deduction on your personal return. Ask your payroll provider to set it up correctly.

What it costs

Brian covers this in the video · watch from 8:58

Brian's 2019 estimate was about $25 to $50 a month for Gusto or QuickBooks, depending on the plan, and up to about $100 a month for pricier providers. We have not re-checked current prices; they change often, so compare plans directly.

His bottom line still holds. Software removes the manual work: monthly deposits, quarterly reports to the IRS and the state, unemployment filings and year-end W-2s. For most one-person S corps, that is worth the monthly fee.

Next steps

Educational information, not tax, legal or payroll advice. ClearValue Lending is an education and comparison platform; it does not prepare tax returns or run payroll, and it does not endorse any payroll provider. For your own situation, talk to a CPA or enrolled agent.

Questions viewers ask

Do I have to run payroll if I'm the only person in my S corp?

Yes, if you work in the business. As a shareholder-employee you must be paid reasonable compensation as wages, with tax withheld, before taking non-wage distributions.

How often should a one-person S corp run payroll?

Brian recommends monthly. It is the least work for a single employee. Your federal deposit timing depends on your IRS deposit schedule, which for most small employers is by the 15th of the following month.

What payroll taxes does an S corp pay on the owner's salary?

Social Security at 6.2% and Medicare at 1.45% from both you and the corporation, plus federal unemployment tax (FUTA) and state unemployment tax. Your income tax is withheld based on your W-4.

What is the Social Security wage base for 2026?

$184,500. Social Security tax applies to wages up to that amount; Medicare tax has no limit, and 0.9% Additional Medicare tax is withheld on wages over $200,000.

Which payroll forms does a one-person S corp file?

Form 941 each quarter (or Form 944 once a year if the IRS allows it), Form 940 for federal unemployment, and Form W-2 with W-3 by January 31, plus your state's withholding and unemployment reports.

Do I need to register with my state before running payroll?

Yes. Brian advises registering with your state revenue department and unemployment agency first, because payroll software needs those account numbers and rates. Even states with no income tax charge unemployment tax.

Can I make federal payroll tax deposits by check?

No. Federal tax deposits must be made electronically, for example through EFTPS, your IRS business tax account or Direct Pay for businesses. Most payroll software does this for you.

How much does payroll software cost for a one-person S corp?

Brian estimated about $25 to $50 a month in 2019, and up to about $100 for full-service providers. Prices change often, so compare current plans and make sure tax payments and e-filing are included.

How are my health insurance premiums handled in an S corp?

If you own more than 2%, the corporation pays the premiums and reports them as wages on your W-2. That lets you take an above-the-line deduction on your personal return.

Full transcript

From YouTube's auto-generated English captions, cleaned for punctuation and paragraphs. Brian's words are unchanged except for clear caption errors; text in [brackets] marks an editor's insertion or audio the captions did not catch.

Read the full transcript (1,816 words)

Editor's note: This video is from November 2019. Brian mentions specific payroll providers and prices as examples from his practice; ClearValue Lending does not endorse any of them, and the prices are his 2019 figures.

S corp payroll overview watch from 0:00

Welcome back to our channel, ClearValue Tax. My name is Brian Kim, I'm a certified public accountant, and in today's video we will be discussing the S Corp payroll setup. So this will not be a video about determining what should your salary be versus your distributions and the tax savings associated with that. That's a separate video. This video will be about the payroll setup for the S Corp. So let's begin by just saying that now that you have an S Corp, you will be an employee of your corporation, so you will be an employee shareholder. So because you're an employee, you need to run a payroll on yourself. Ok, so let's just say

Manual vs automated payroll watch from 0:36

that I highly recommend going with the software to run your payroll functions, because you can do all the payroll paperwork and tax deposits yourself manually on PDFs for doing the payroll, or reporting to all the government agencies, and the tax deposits. However, having a software just simplifies your life so much, and the prices are very reasonable. So if you wanted to do yourself manually, this is what it would entail. Let's just say that, ok, you are an employee on your corporation, your S corp. So then you need to do monthly tax deposits. Well, if you're going to be paying yourself monthly, which you generally would be, you need to do monthly tax deposits for your employee withholdings, so that's a monthly thing that you need to do.

And also you need to fill out the quarterly reports, and you need to be sending those in, the quarterly reports, to the IRS, to your Department of Revenue with the states, to unemployment, so state unemployment reporting. So that's every 3 months you're gonna be filling in PDFs. It's going to be so time-consuming. The softwares, they take care of all this for you automatically, just based off your payroll, what you're running. It just automatically generates those reports, and as simple as just clicking a button, and then your taxes, your tax deposits get paid electronically. So the reports, they also get generated automatically and they get e-filed.

Basically all you need to do is just click Submit, or just have it on autopilot. So this eliminates the need for you to manually be sending in those tax deposits on a monthly basis, and also they were, it just eliminates the need for you to be filling out those PDFs and sending those in to those three agencies on a quarterly basis. So if you want to do that, if you'd be my guests, but I'm telling you, it's just so worth it to choose a payroll provider, you know, a cloud-based payroll service, and have them take care of all those things for you just automatically. So let's just go

State registration requirements watch from 2:54

to the actual setup. So before you go to the actual setup of the payroll, you need to get your registrations done with your state, that's the Department of Revenue. So what do I mean by that? Let's just say, okay, there are some states where there's no state taxes, so you would not be withholding state taxes as the employee nor as the employer. So even if that's the case, you still have the state unemployment tax reporting obligation, payment obligations. So you still need to complete your state registration setup with the Department of Revenue or unemployment or both, so that you can have those account numbers and those tax rates linked up to your payroll software, whichever provider that may be.

Without that, without the registrations with the states, your payroll setup will be incomplete. A lot of times they won't even let you progress. So you need to have this ready. It would be better if you did that beforehand, so that when you're going through the payroll setup process with whichever provider, you can just take care of everything and have it set up fully and completely at that point in time, rather than having to backtrack and just have your registration with your payroll just not finished, of course. So that would be my recommendation: get your state registrations done before the actual payroll setup.

Choosing payroll software watch from 4:23

So once you have that, you need to choose your software. The most popular software out there would be the QuickBooks Online Payroll, the QuickBooks payroll, or Gusto. So that is what I typically see for my S corp clients. So these, you just make, you just need to make sure that you don't choose the very cheapest option that does not allow you to do the payment methods for the tax deposits nor the e-filing methods for the reports, because, I mean, that's one of the, the biggest beauties of having these software providers, because they just take care of those reports and set them off with just a click of a button, just instantaneously.

If you need to print those, you know, sign those, snail mail those in, I mean, that just, that just eliminates so much of the benefits. So just make sure you choose the option where it offers the payments option and the e-filing option, because those are obligations that you need to do along with your payroll. Okay, so when you are

Software configuration watch from 5:28

setting up your software for your payroll, whichever provider that may be, Gusto, QuickBooks, or any other, I mean, they're gonna be pretty much asking you the same questions. You know, they're gonna be asking you what's your salary going to be, and again, please check out my video about how to determine what your salary should be for maximizing your tax savings. They're gonna be asking you what's the frequency of your payroll, so how often do you want to pay yourself. My recommendation, if it's just going to be you as the only employee of your S corp, it's to run a monthly payroll, because you don't want to be going into the software if you do bimonthly or bi-weekly.

I mean, you don't want to be going into the software twice a month to run the payroll on yourself. You might as well just do monthly, so that you can just do a payroll just once a month. You know, it's gonna be half, this is gonna reduce your workload. You know, just, I mean, there's not going to be much work to do, run the payroll on yourself, but again, it's just gonna, it's just going to be doing it once a month versus twice a month. It's gonna be the same thing, there's benefit of running it twice a month or bi-weekly. So that's the frequency, that's my recommendation on the frequency of the pay to yourself.

And then they're gonna be asking you just the basic questions about the employer data, employee and employer bank account, employer address, all that. And they're gonna be asking the employee, the employee data, you know, what's your, you know, what's your bank account, what's your personal address, all that. So when

Payroll best practices watch from 6:56

you run the payroll, it's going to be a shifting of the funds from the employer bank account to your personal bank account, because you are acting as a legitimate employee of the corporation. So you're gonna be no different than any other employee at any other employer. So you're actually gonna be see, well, for best practices, the, the movement of the salary going from your employer business account, your business bank account, to your employee, to your personal bank account. So you're gonna be seen the shifting of the funds, the movement of the funds, as if you are an employee of your own corporation, which you are.

So every, every [payroll provider], whether it's QuickBooks or Gusto or any other payroll provider, third-party Paychex or ADP, they're all gonna be asking you the same questions. So it's just a matter of how much hand holding that you wants, and also about the pricing. So generally Gusto is going to be cheaper than QuickBooks, because QuickBooks is the biggest name-brand out there. And even within QuickBooks, they're gonna be asking you for the lowest version, you know, the mid-tier version, or the most expensive version. I mean, it depends on what point in time that you're watching this video, but generally you're gonna be wanting to select the middle option, that is not the most expensive but it's not the cheapest, because that's gonna give you everything that you need without all the bells and whistles.

So if you want everything just completely done for you, and you just do not want to be involved whatsoever, I mean, some of those people will go to the full service Paychex or ADP, but they're gonna be much more costly. So the good thing about the Gusto or the QuickBooks is that they allow the account, it's sharing access. So if you are working with [an accountant], you know, they can have their own login, and they can look at your accounts to see that it's set up properly, payrolls running properly, the reports are being filed, you know, everything looks good. Okay, how much

Costs and conclusion watch from 8:58

is this software going to cost you? So if you're gonna choose Gusto or QuickBooks, I mean, generally that's gonna be running you about 25 a month to $50 a month, just depending on the service plan. If you choose the more expensive options, you know, other payroll providers, they could be charging you as much as $100 a month, you know, just for you, one employee, for your employee S corp obligations, the payroll, the basic payroll functions and duties. So it just depends on the service plan you wants, but you should be expecting to pay about twenty-five to fifty dollars a month. And again, you know, if you think about it, that's going to eliminate the whole need for you to be manually doing all these things by yourself: the tax deposits to the IRS, to states, unemployment, and filling out those reports and sending those in quarterly, W-2 creation, and all that.

I mean, it's just a huge, you know, time saver, and it's most likely, in most cases, going to be, you know, worth it for you. So I hope all this makes sense, but if you have any questions, please leave them below, please leave them in comments below. We'd be happy to get back to you. And again, if you are looking for more details about a particular topic about the S corp payroll or the S corp salary or just the S Corp in general, then please check out our other videos. I hope you found this helpful. If you [found this helpful], please give me a like, I'd highly appreciate that, and please subscribe, because we're always making great videos that are applicable to you. Take care.

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